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ASM98894v1

Organism name:
Streptomyces europaeiscabiei (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL B-24443
BioSample:
SAMN03581172
BioProject:
PRJNA282974
Submitter:
USDA/ARS/NCAUR
Date:
2015/05/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000988945.1 (latest)
RefSeq assembly accession:
GCF_000988945.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LCTL01
Assembly method:
CLCbio Genomics Workbench v. 8.0.1
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina MiSeq

IDs: 330311 [UID] 1753638 [GenBank] 1769958 [RefSeq]

See Genome Information for Streptomyces europaeiscabiei

There are 31 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length9,982,072
Total ungapped length9,982,072
Number of contigs1,056
Contig N5016,369
Contig L50161
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,056

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,982,0721,0569,982,07216,36900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces europaeiscabieiStreptomyces europaeiscabiei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014873495.1Streptomyces stelliscabieitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.7667.4764.16

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna