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ASM97498v2

Organism name:
Streptomyces mangrovisoli (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MUSC 149
BioSample:
SAMN03451686
BioProject:
PRJNA279916
Submitter:
University of Malaya
Date:
2016/11/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000974985.2 (latest)
RefSeq assembly accession:
GCF_000974985.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LAVA02
Assembly method:
CLC NGS Cell v. June-2016
Expected final version:
yes
Genome coverage:
119.0x
Sequencing technology:
Illumina MiSeq

IDs: 875331 [UID] 3689808 [GenBank] 3690728 [RefSeq]

See Genome Information for Streptomyces mangrovisoli

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/13/2016 11:27:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,878
CDS (total)::7,800
Genes (coding)::7,461
CDS (coding)::7,461
Genes (RNA)::78
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::4, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::339
Pseudo Genes (ambiguous residues)::0 of 339
Pseudo Genes (frameshifted)::25 of 339
Pseudo Genes (incomplete)::314 of 339
Pseudo Genes (internal stop)::5 of 339
Pseudo Genes (multiple problems)::5 of 339
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,165,825
Total ungapped length9,165,825
Number of contigs199
Contig N50108,867
Contig L5027
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)199

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,165,8251999,165,825108,86700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces mangrovisoliStreptomyces mangrovisoli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019890635.1Streptomyces sennicompostitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.3833.4741.74

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected