Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM96734v1

Organism name:: Staphylococcus aureus subsp. aureus ST228 (firmicutes)
Taxonomy check:: OK
Infraspecific name:: Strain: ST228
Isolate:: 10497
BioSample:: SAMEA3283122
BioProject:: PRJEA71345
Submitter:: Swiss Institute of Bioinformatics - Vital-IT group
Date:: 2012/10/05
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000967345.1 (latest)
RefSeq assembly accession:: GCF_000967345.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 319221 [UID] 1716318 [GenBank] 1716338 [RefSeq]

See Genome Information for Staphylococcus aureus

Pathogen Detection Resources

There are 90921 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000967345.1	=	GCF_000967345.1	ASM96734v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/12/2023 15:17:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,758
CDSs (total)::2,677
Genes (coding)::2,588
CDSs (with protein)::2,588
Genes (RNA)::81
rRNAs::6, 5, 5 (5S, 16S, 23S)
complete rRNAs::6, 5, 5 (5S, 16S, 23S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::89
CDSs (without protein)::89
Pseudo Genes (ambiguous residues)::0 of 89
Pseudo Genes (frameshifted)::45 of 89
Pseudo Genes (incomplete)::39 of 89
Pseudo Genes (internal stop)::29 of 89
Pseudo Genes (multiple problems)::23 of 89
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,790,366
Total ungapped length	2,790,366
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	HE579061.1	=	NC_020564.1
Plasmid pI2T2	HE579062.1	=	NC_020531.1

Molecule	Total Length
All	2,790,366
Chromosome	2,759,512
Plasmid pI2T2	30,854

	ANI	Query coverage	Subject coverage
Declared type	98.96	93.59	93.70
Best-match type	98.96	93.59	93.70

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM96734v1

See Genome Information for Staphylococcus aureus

Pathogen Detection Resources

There are 90921 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result