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ASM96143v1

Organism name:
Xanthomonas citri pv. citri (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AW13
BioSample:
SAMN02911848
BioProject:
PRJNA255042
Submitter:
Citrus Research and Education center, Univerisity of Florida
Date:
2015/03/24
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000961435.1 (latest)
RefSeq assembly accession:
GCF_000961435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Bio v. 6.0
Reference guided assembly:
CP003778.1
Sequencing technology:
Illumina CLC

IDs: 316031 [UID] 1704988 [GenBank] 1709548 [RefSeq]

See Genome Information for Xanthomonas citri

There are 924 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Source bacteria/DNA available from Dr. Nian Wang, Citrus Research and Education Center, University of Florida (nianwang@ufl.edu)

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/01/2023 13:03:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,681
CDSs (total)::4,583
Genes (coding)::4,380
CDSs (with protein)::4,380
Genes (RNA)::98
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::53
ncRNAs::39
Pseudo Genes (total)::203
CDSs (without protein)::203
Pseudo Genes (ambiguous residues)::0 of 203
Pseudo Genes (frameshifted)::108 of 203
Pseudo Genes (incomplete)::107 of 203
Pseudo Genes (internal stop)::30 of 203
Pseudo Genes (multiple problems)::40 of 203
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,398,334
Total ungapped length5,398,334
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000961445.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP009031.1=NZ_CP009031.1
Plasmid pXCAW19CP009029.1=NZ_CP009029.1
Plasmid pXCAW58CP009030.1=NZ_CP009030.1

Assembly statistics

MoleculeTotal
Length
All5,398,334
Chromosome 5,321,148
Plasmid pXCAW1918,869
Plasmid pXCAW5858,317

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Xanthomonas citri pv. citriXanthomonas citri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_963669775.1Xanthomonas citri pv. citrisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_963669775.1Xanthomonas citrisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8192.9996.99
Best-match type99.8192.9996.99

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna