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Source database (GenBank or RefSeq) File type

ASM87569v1

Organism name:: Brucella suis (a-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: Human/AR/US/1981
BioSample:: SAMN03292446
BioProject:: PRJNA257008
Submitter:: µFORGE
Date:: 2015/02/13
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000875695.1 (latest)
RefSeq assembly accession:: GCF_000875695.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: rimmomatic v. 0.32; SGA v. 0.10.13; khmer v. 1.3; iMetAMOS v. 1.5; FastQC v 0.10.0; Spades v.3.1.1; Pilon v. 1.8; Quast v. 2.2
Reference guided assembly:: GCF_000600055.1
Genome coverage:: 250x
Sequencing technology:: Illumina MiSeq

IDs: 271791 [UID] 1570328 [GenBank] 1579908 [RefSeq]

See Genome Information for Brucella suis

Pathogen Detection Resources

There are 93 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000875695.1	=	GCF_000875695.1	ASM87569v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::01/16/2024 03:13:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,233
CDSs (total)::3,165
Genes (coding)::3,030
CDSs (with protein)::3,030
Genes (RNA)::68
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::55
ncRNAs::4
Pseudo Genes (total)::135
CDSs (without protein)::135
Pseudo Genes (ambiguous residues)::0 of 135
Pseudo Genes (frameshifted)::85 of 135
Pseudo Genes (incomplete)::35 of 135
Pseudo Genes (internal stop)::33 of 135
Pseudo Genes (multiple problems)::15 of 135
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,315,086
Total ungapped length	3,315,086
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome I	CP010850.1	=	NZ_CP010850.1
Chromosome II	CP010851.1	=	NZ_CP010851.1

Molecule	Total Length
All	3,315,086
Chromosome I	2,107,845
Chromosome II	1,207,241

	ANI	Query coverage	Subject coverage
Declared type	99.99	99.99	99.99
Best-match type	99.99	99.99	99.99

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ASM87569v1

See Genome Information for Brucella suis

Pathogen Detection Resources

There are 93 assemblies for this organism

History (Show revision history)

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Genome-Annotation-Data

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