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Mesorhizobium plurifarium STM8773 genome assembly

Organism name:
Mesorhizobium plurifarium (a-proteobacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMEA2677839
BioProject:
PRJEB6723
Submitter:
IRD
Date:
2014/09/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • missing strain identifier
GenBank assembly accession:
GCA_000824785.1 (latest)
RefSeq assembly accession:
GCF_000824785.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CCNB01
Genome coverage:
2000x

IDs: 246141 [UID] 1484638 [GenBank] 1505748 [RefSeq]

See Genome Information for Mesorhizobium plurifarium

Pathogen Detection Resources

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length7,140,341
Total ungapped length7,138,901
Gaps between scaffolds0
Number of scaffolds46
Scaffold N50408,781
Scaffold L506
Number of contigs190
Contig N50105,449
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)46

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced7,140,341467,138,901408,7811440

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mesorhizobium plurifariumMesorhizobium plurifarium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003289965.1Mesorhizobium atlanticumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.7368.4274.73

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna