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ASM77056v1

Organism name:
Burkholderia pseudomallei (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: TSV202
BioSample:
SAMN02951647
BioProject:
PRJNA231208
Submitter:
Los Alamos National Laboratory
Date:
2014/10/31
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000770565.1 (latest)
RefSeq assembly accession:
GCF_000770565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6; Velvet v. 1.2.08; Allpaths v. 44837; Phrap v. SPS - 4.24
Genome coverage:
380x
Sequencing technology:
Illumina; PacBio

IDs: 218971 [UID] 1367058 [GenBank] 1638778 [RefSeq]

See Genome Information for Burkholderia pseudomallei

Pathogen Detection Resources

There are 3246 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The DNA was obtained from Dr. Richard Robison, Brigham Young University (BYU)

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/25/2024 02:07:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,073
CDSs (total)::6,996
Genes (coding)::6,768
CDSs (with protein)::6,768
Genes (RNA)::77
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::60
ncRNAs::5
Pseudo Genes (total)::228
CDSs (without protein)::228
Pseudo Genes (ambiguous residues)::0 of 228
Pseudo Genes (frameshifted)::128 of 228
Pseudo Genes (incomplete)::149 of 228
Pseudo Genes (internal stop)::27 of 228
Pseudo Genes (multiple problems)::63 of 228
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,814,142
Total ungapped length7,814,142
Total number of chromosomes and plasmids4

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000770575.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP009157.1=NZ_CP009157.1
Chromosome 2CP009156.1=NZ_CP009156.1
Plasmid 1CP009155.1=NZ_CP009155.1
Plasmid 2CP009154.1=NZ_CP009154.1

Assembly statistics

MoleculeTotal
Length
All7,814,142
Chromosome 14,228,716
Chromosome 23,267,160
Chromosome 1271,168
Chromosome 247,098

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia pseudomalleiBurkholderia pseudomallei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_030297255.1Burkholderia pseudomalleitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030297255.1Burkholderia pseudomalleitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2487.9197.01
Best-match type99.2487.9197.01

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna