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ASM75598v1

Organism name:
Burkholderia oklahomensis (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: EO147
BioSample:
SAMN02847801
BioProject:
PRJNA244064
Submitter:
Los Alamos National Laboratory
Date:
2014/09/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000755985.1 (latest)
RefSeq assembly accession:
GCF_000755985.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Newbler v. 2.6; Velvet v. 1.2.08; Allpaths v. 39750; Phrap v. SPS - 4.24
Genome coverage:
349x
Sequencing technology:
Illumina; PacBio

IDs: 211431 [UID] 1205628 [GenBank] 1511428 [RefSeq]

See Genome Information for Burkholderia oklahomensis

There are 12 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
The DNA was obtained from USAMRIID

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/25/2024 01:52:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,589
CDSs (total)::6,514
Genes (coding)::6,245
CDSs (with protein)::6,245
Genes (RNA)::75
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::59
ncRNAs::4
Pseudo Genes (total)::269
CDSs (without protein)::269
Pseudo Genes (ambiguous residues)::0 of 269
Pseudo Genes (frameshifted)::135 of 269
Pseudo Genes (incomplete)::197 of 269
Pseudo Genes (internal stop)::34 of 269
Pseudo Genes (multiple problems)::85 of 269
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,313,673
Total ungapped length7,313,673
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000755995.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP008726.1=NZ_CP008726.1
Chromosome 2CP008727.1=NZ_CP008727.1

Assembly statistics

MoleculeTotal
Length
All7,313,673
Chromosome 14,192,008
Chromosome 23,121,665

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia oklahomensisBurkholderia oklahomensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000959365.1Burkholderia oklahomensis C6786type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000959365.1Burkholderia oklahomensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2593.6295.96
Best-match type99.2593.6295.96

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna