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ASM70278v1

Organism name:
Mycoplasmopsis primatum ATCC 25948 (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 25948
BioSample:
SAMN02841175
BioProject:
PRJNA223080
Submitter:
DOE Joint Genome Institute
Date:
2014/06/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000702785.1 (latest)
RefSeq assembly accession:
GCF_000702785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JNJV01
Assembly method:
Unknown program v. before 2014-03-12
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 184561 [UID] 1109818 [GenBank] 1142448 [RefSeq]

See Genome Information for Mycoplasmopsis primatum

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1024866
Source DNA and organism available from Tim Lilburn at the American Type Culture Collection (ATCC) (TLilburn@atcc.org)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The JGI and collaborators ... endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376) 
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
environment::Host
investigation_type::bacteria_archaea
project_name::Mycoplasma primatum ATCC 25948
sequencing_meth::WGS
ref_biomaterial::ATCC 25948
GOLD Stamp ID::Gi0051634
Type Strain::Yes
Gene Calling Method::Prodigal 2.5
Isolation Site::Prostatic, urethral tissues of monkey, Cercopithecus aethiops.
Gram Staining::Gram-
##MIGS-Data-END##

Global statistics

Total sequence length902,769
Total ungapped length902,769
Number of contigs63
Contig N5026,072
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)63

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced902,76963902,76926,07200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mycoplasmopsis primatum ATCC 25948Mycoplasmopsis primatum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900660665.1Mycoplasmopsis maculosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.051.581.55

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected