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Source database (GenBank or RefSeq) File type

ASM64851v1

Anomalous assembly.

Organism name:

Citrobacter freundii CFNIH1 (enterobacteria)

Taxonomy check:

Failed

Infraspecific name:

Strain: CFNIH1

BioSample:

SAMN02713684

BioProject:

PRJNA202883

Submitter:

NISC

Date:

2014/04/28

Assembly type:

Assembly level:

Complete Genome

Genome representation:

full

Assembly anomaly:

unverified source organism

Excluded from RefSeq:

unverified source organism

GenBank assembly accession:

GCA_000648515.1 (latest)

RefSeq assembly accession:

GCF_000648515.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

Assembly method:

HGAP2 v. unknown

Genome coverage:

350x

Sequencing technology:

Pacific Biosciences RS II

IDs: 156771 [UID] 1024648 [GenBank] 1517208 [RefSeq]

See Genome Information for Citrobacter freundii

Pathogen Detection Resources

There are 2623 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000648515.1	=	GCF_000648515.1	ASM64851v1	Complete Genome	Latest GenBank, RefSeq suppressed

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Bacteria and source DNA available from: Adrian Zelazny, Department of Laboratory Medicine, National Institutes of Health Clinical Center.

Global statistics

Total sequence length	5,371,331
Total ungapped length	5,371,331
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP007557.1	=	NZ_CP007557.1
Plasmid pKEC-a3c	CP007558.1	=	NZ_CP007558.1

Molecule	Total Length
All	5,371,331
Chromosome	5,099,034
Plasmid pKEC-a3c	272,297

	ANI	Query coverage	Subject coverage
Declared type	90.83	77.17	83.60
Best-match type	99.95	92.07	92.65

Assembly

Genome Assembly

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Contig N50

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ASM64851v1

See Genome Information for Citrobacter freundii

Pathogen Detection Resources

There are 2623 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result