U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM62124v1

Organism name:
Pseudomonas monteilii NBRC 103158 = DSM 14164 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 14164
BioSample:
SAMN02743984
BioProject:
PRJNA221052
Submitter:
DOE Joint Genome Institute
Date:
2014/04/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000621245.1 (latest)
RefSeq assembly accession:
GCF_000621245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JHYV01
Assembly method:
vpAllpaths v. r46652
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 141651 [UID] 993578 [GenBank] 1127008 [RefSeq]

See Genome Information for Pseudomonas monteilii

There are 66 assemblies for this organism

See more

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1021509
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::vpAllpaths v. r46652
country::France
environment::Host
investigation_type::bacteria_archaea
project_name::Pseudomonas monteilii DSM 14164
sequencing_meth::WGS
ref_biomaterial::DSM 14164
GOLD Stamp ID::Gi18320
Funding Program::DOE-CSP 2012
Gene Calling Method::Prodigal 2.5
Isolation Site::human bronchial aspirate
Host Name::Homo sapiens
Gram Staining::Gram-
##MIGS-Data-END##

Global statistics

Total sequence length6,308,713
Total ungapped length6,308,428
Gaps between scaffolds0
Number of scaffolds85
Scaffold N50204,302
Scaffold L5010
Number of contigs86
Contig N50186,732
Contig L5011
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)86

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,308,713856,308,428204,30210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas monteilii NBRC 103158 = DSM 14164Pseudomonas monteilii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000730605.1Pseudomonas monteilii NBRC 103158 = DSM 14164type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000730605.1Pseudomonas monteiliitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.3499.48
Best-match type99.9999.3499.48

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna