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ASM62112v1

Organism name:
Maribacter antarcticus DSM 21422 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 21422
BioSample:
SAMN02743978
BioProject:
PRJNA221031
Submitter:
DOE Joint Genome Institute
Date:
2014/04/08
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000621125.1 (latest)
RefSeq assembly accession:
GCF_000621125.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JHZC01
Assembly method:
vpAllpaths v. r46652
Genome coverage:
Unknown
Sequencing technology:
Illumina HiSeq 2000

IDs: 141591 [UID] 993458 [GenBank] 1115028 [RefSeq]

See Genome Information for Maribacter antarcticus

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 1010977
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Nikos Kyrpides (nckyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI
Annotation by JGI
The ... JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::vpAllpaths v. r46652
country::Antarctic Ocean
environment::Marine
investigation_type::bacteria_archaea
isol_growth_condt::19502334
project_name::Maribacter antarcticus DSM 21422
sequencing_meth::WGS
ref_biomaterial::DSM 21422
rel_to_oxygen::Aerobe
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi11637
Type Strain::Yes
Funding Program::DOE-CSP 2012
Gene Calling Method::Prodigal 2.5
Isolation Site::Green alga (Pyramimonas gelidicola)
Host Name::Pyramimonas gelidicola
Cell Shape::Rod-shaped
Motility::Nonmotile
Temperature Range::Psychrophile
Temperature Optimum::10 C
pH::7-9
Gram Staining::Gram-
Phenotypes::Catalase positive
##MIGS-Data-END##

Global statistics

Total sequence length4,853,010
Total ungapped length4,850,061
Gaps between scaffolds0
Number of scaffolds32
Scaffold N50353,268
Scaffold L504
Number of contigs35
Contig N50339,358
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)35

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,853,010324,850,061353,26830

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Maribacter antarcticus DSM 21422Maribacter antarcticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000153485.2Psychroflexus torquistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.892.002.25

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected