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Source database (GenBank or RefSeq) File type

ASM52005v1

Organism name:: Escherichia coli O145:H28 str. RM13516 (E. coli)
Taxonomy check:: OK
Infraspecific name:: Strain: RM13516
BioSample:: SAMN02641384
BioProject:: PRJNA178650
Submitter:: USDA, ARS, WRRC, PSM
Date:: 2014/01/14
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000520055.1 (latest)
RefSeq assembly accession:: GCF_000520055.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Newbler v. v2.3; Velvet v. v1.0.13; Geneious v. v5.1
Sequencing technology:: 454; Illumina; PacBio

IDs: 92711 [UID] 893108 [GenBank] 1495418 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 265896 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000520055.1	=	GCF_000520055.1	ASM52005v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::05/17/2023 04:59:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,580
CDSs (total)::5,451
Genes (coding)::5,145
CDSs (with protein)::5,145
Genes (RNA)::129
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::99
ncRNAs::8
Pseudo Genes (total)::306
CDSs (without protein)::306
Pseudo Genes (ambiguous residues)::0 of 306
Pseudo Genes (frameshifted)::111 of 306
Pseudo Genes (incomplete)::191 of 306
Pseudo Genes (internal stop)::59 of 306
Pseudo Genes (multiple problems)::49 of 306
Pseudo Genes (short protein)::4 of 306
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,559,008
Total ungapped length	5,559,008
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP006262.1	=	NZ_CP006262.1
Plasmid pO145-13516	CP006263.1	=	NZ_CP006263.1
Plasmid pRM13516	CP006264.1	=	NZ_CP006264.1

Molecule	Total Length
All	5,559,008
Chromosome	5,402,276
Plasmid pO145-13516	98,066
Plasmid pRM13516	58,666

	ANI	Query coverage	Subject coverage
Declared type	98.41	84.05	88.16
Best-match type	98.41	84.05	88.16

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ASM52005v1

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 265896 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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