U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



GS De Novo

Organism name:
Thalassobacillus devorans MSP14 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: MSP14
BioSample:
SAMN02469736
BioProject:
PRJNA219316
Submitter:
Directorate of Groundnut Research (Indian Council of Agricultural Research)
Date:
2013/11/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000496835.1 (latest)
RefSeq assembly accession:
GCF_000496835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AWXW01
Assembly method:
GS DENOVO v. 2.6
Expected final version:
no
Genome coverage:
139x
Sequencing technology:
454

IDs: 80431 [UID] 857418 [GenBank] 1127798 [RefSeq]

See Genome Information for Thalassobacillus devorans

There are 5 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Dr. K. K. Pal, Microbiology, Directorate of Groundnut Research (ICAR), Ivnagar Road, PB No. 5, Junagadh, Gujarat 362001,India

Global statistics

Total sequence length3,935,133
Total ungapped length3,923,021
Gaps between scaffolds0
Number of scaffolds9
Scaffold N501,214,989
Scaffold L502
Number of contigs32
Contig N50260,162
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)32

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,935,13393,923,0211,214,989230

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thalassobacillus devorans MSP14Thalassobacillus devorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014635125.1Thalassobacillus devoranstype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900107755.1Thalassobacillus cyritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type82.5537.4736.29
Best-match type88.5677.5070.70

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna