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ASM47238v1

Organism name:
Bradyrhizobium sp. ARR65 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ARR65
BioSample:
SAMN02441123
BioProject:
PRJNA182742
Submitter:
DOE Joint Genome Institute
Date:
2013/09/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000472385.1 (latest)
RefSeq assembly accession:
GCF_000472385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AWZU01
Assembly method:
ALLPATHS v. R37654
Genome coverage:
Unknown
Sequencing technology:
454-GS-FLX-Titanium; Illumina

IDs: 66271 [UID] 791328 [GenBank] 1078048 [RefSeq]

See Genome Information for Bradyrhizobium sp. ARR65

History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 404550
Source DNA and Organism available from Wayne Reeve (W.Reeve@murdoch.edu.au)
Contacts: Nikos Kyrpides (NCKyrpides@lbl.gov)
 Tanja Woyke (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Annotation by JGI-ORNL
The JGI and collaborators endorse the principles for the distribution and ... use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376) 
Full annotations are available from IMG  more

MIGS-Data

##MIGS-Data-START##
assembly::ALLPATHS v. R37654
country::Australia
environment::Host; Plant root; Root nodule; Soil
investigation_type::bacteria_archaea
lat_lon::-13.335 132.439
project_name::Bradyrhizobium sp. ARR65
sequencing_meth::WGS
biotic_relationship::Symbiotic
rel_to_oxygen::Aerobe
finishing_strategy::Level 1: Standard Draft
GOLD Stamp ID::Gi08868
Type Strain::No
Funding Program::DOE-DD 2010
Isolation Site::Kakadu National Park
Host Name::Stylosanthes viscosa
Cell Shape::Rod-shaped
Motility::Motile
Sporulation::Nonsporulating
Temperature Range::Mesophile
Temperature Optimum::28
pH::5-8
Gram Staining::Gram-
Symbiotic Relationship::Mutualistic
Diseases::None
Phenotypes::Non-Pathogen
##MIGS-Data-END##

Global statistics

Total sequence length8,613,869
Total ungapped length8,613,869
Number of contigs139
Contig N50144,617
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)139

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,613,8691398,613,869144,61700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bradyrhizobium sp. ARR65Bradyrhizobium sp. ARR65

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001641635.1Bradyrhizobium centrolobiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.1222.4819.16

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna