U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM46254v2

Organism name:
Escherichia coli B106 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: B106
BioSample:
SAMN01885529
BioProject:
PRJNA86845
Submitter:
IGS
Date:
2013/08/29
Assembly type:
na
Release type:
minor
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000462545.2 (latest)
RefSeq assembly accession:
GCF_000462545.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AVRV01
Assembly method:
Celera Assembler v. 7.0
Genome coverage:
93.44x
Sequencing technology:
Illumina

IDs: 568161 [UID] 2548348 [GenBank] 2677048 [RefSeq]

See Genome Information for Escherichia coli

There are 265156 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria available from the Biodefense and Emerging Infections Research Resources Repository

Global statistics

Total sequence length5,203,901
Total ungapped length5,203,901
Number of contigs119
Contig N50132,266
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)119

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,203,9011195,203,901132,26600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli B106Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001281725.1Escherichia colicladeref

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001281725.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9698.2296.44
Best-match type99.9698.2296.44

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna