Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

Ccap_1.0

This assembly has been replaced. See current version

Organism name:

Ceratitis capitata (Mediterranean fruit fly)

BioSample:

SAMN02953830

BioProject:

PRJNA168120

Submitter:

The i5k Initiative

Date:

2013/03/21

Assembly level:

Scaffold

Genome representation:

full

GenBank assembly accession:

GCA_000347755.1 (replaced)

RefSeq assembly accession:

GCF_000347755.1 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

AOHK01

Assembly method:

AllPaths v. 35218; ATLAS-link v. 1.0; ATLAS-gapfill v. 2.2

Genome coverage:

152.5x

Sequencing technology:

Illumina HiSeq

IDs: 559148 [UID] 559148 [GenBank] 653318 [RefSeq]

See Genome Information for Ceratitis capitata

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000347755.4	≠	GCF_000347755.3	Ccap_2.1	Scaffold	Latest GenBank, Latest RefSeq
GCA_000347755.3	n/a	n/a	Ccap_2.0	Scaffold	Replaced GenBank
GCA_000347755.2	≠	GCF_000347755.2	Ccap_1.1	Scaffold	Replaced GenBank, Replaced RefSeq
GCA_000347755.1	≠	GCF_000347755.1	Ccap_1.0	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

DNA was provided by the laboratory of Dr. Giuliano Gasperi laboratory of Insect Molecular Biology at the University of Pavia, Italy

Global statistics

Total sequence length	484,789,472
Total ungapped length	440,719,696
Gaps between scaffolds	0
Number of scaffolds	1,824
Scaffold N50	4,060,615
Scaffold L50	35
Number of contigs	25,561
Contig N50	45,711
Contig L50	2,547
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	25,561

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

Ccap_1.0

See Genome Information for Ceratitis capitata

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear