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CA_glsol201

Organism name:
Leptospira interrogans serovar Szwajizak str. Szwajizak (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Szwajizak
BioSample:
SAMN01919802
BioProject:
PRJNA189023
Submitter:
J. Craig Venter Institute
Date:
2013/03/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • RefSeq annotation failed
GenBank assembly accession:
GCA_000342925.1 (latest)
RefSeq assembly accession:
GCF_000342925.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AOUT01
Assembly method:
Celera Assembler v. 7.0
Genome coverage:
33.61x
Sequencing technology:
Illumina HiSeq 2000

IDs: 629278 [UID] 552928 [GenBank] 629278 [RefSeq]

See Genome Information for Leptospira interrogans

There are 396 assemblies for this organism

See more

History (Show revision history)

Comment

This work was supported by the National Institute of Allergy and Infectious Diseases (NIAID), Genome Sequencing Centers for Infectious Diseases (GSCID) program.

Global statistics

Total sequence length4,879,788
Total ungapped length4,879,788
Number of contigs250
Contig N5031,905
Contig L5049
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)250

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,879,7882504,879,78831,90500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leptospira interrogans serovar Szwajizak str. SzwajizakLeptospira interrogans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000343165.1Leptospira interrogans serovar Icterohaemorrhagiae str. RGAtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000343165.1Leptospira interroganstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.5784.4389.57
Best-match type97.5784.4389.57

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna