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Prev_nigr_F0103_V1

Organism name:
Prevotella nigrescens F0103 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: F0103
BioSample:
SAMN02595377
BioProject:
PRJNA43119
Submitter:
Broad Institute
Date:
2013/02/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000336235.1 (latest)
RefSeq assembly accession:
GCF_000336235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADGJ01
Assembly method:
Newbler v. 2.3-PostRelease-11/19/2009
Genome coverage:
35.0x
Sequencing technology:
454

IDs: 535068 [UID] 532488 [GenBank] 535068 [RefSeq]

See Genome Information for Prevotella nigrescens

There are 34 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Bacteria provided by Jacques Izard, PhD, Floyd E. Dewhirst, DDS, PhD, and Anne C. Tanner (The Forsyth Institute, Department of ... Molecular Genetics, 245 First St, Cambridge, Massachusetts, 02142). 
Funded by NIDCR DE016937, "A Foundation for the Oral Microbiome and Metagenome". 
Source DNA provided by Jacques Izard, Akila Ganesan, Oxana V. Baranova, Jessica M. Blanton, Anne C. Tanner and Floyd E. Dewhirst. 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene Calling Method: Prodigal.  more

Global statistics

Total sequence length3,021,735
Total ungapped length3,021,735
Number of contigs131
Contig N5045,493
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)131

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,021,7351313,021,73545,49300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Prevotella nigrescens F0103Prevotella nigrescens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000220235.1Prevotella nigrescens ATCC 33563type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000220235.1Prevotella nigrescenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.1178.9791.35
Best-match type98.1178.9791.35

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna