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IDs: 502788 [UID] 502528 [GenBank] 502788 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4088207 Source DNA and Organism available from Cheryl A. Kerfeld (CKerfeld@lbl.gov) Contacts: Cheryl A. Kerfeld (CKerfeld@lbl.gov) Tanja Woyke (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Annotation by JGI-ORNL The JGI and collaborators endorse the principles for the ... distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::07/16/2023 01:10:15Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.5Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::5,526CDSs (total)::5,431Genes (coding)::5,304CDSs (with protein)::5,304Genes (RNA)::95rRNAs::4, 4, 4 (5S, 16S, 23S)complete rRNAs::4, 4, 4 (5S, 16S, 23S)tRNAs::79ncRNAs::4Pseudo Genes (total)::127CDSs (without protein)::127Pseudo Genes (ambiguous residues)::0 of 127Pseudo Genes (frameshifted)::41 of 127Pseudo Genes (incomplete)::95 of 127Pseudo Genes (internal stop)::23 of 127Pseudo Genes (multiple problems)::28 of 127CRISPR Arrays::13##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Nostoc sp. PCC 7107collection_date::Missinglat_lon::Missingdepth::Missingalt_elev::Missingcountry::USAenvironment::Fresh waternum_replicons::1ref_biomaterial::PCC 7107biotic_relationship::Free livingtrophic_level::Photoheterotrophrel_to_oxygen::Aerobeisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release), VELVET v. 1.0.13, Parallel phrap v. 4.24 SPSfinishing_strategy::FinishedGOLD Stamp ID::Gi04524Funding Program::DOE-GEBA 2009Isolation Site::shallow pondIsolation Comments::isolated by A Neilson in 1970Temperature Range::MesophileDiseases::None##MIGS-Data-END##
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