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Source database (GenBank or RefSeq) File type

Brapa_1.0

This assembly has been replaced. See current version

Organism name:

Brassica rapa (field mustard)

Infraspecific name:

Cultivar: Chiifu-401-42

BioSample:

SAMN02981293

BioProject:

PRJNA59981

Submitter:

Brassica rapa genome sequencing project, BraGSP

Date:

2012/11/07

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_000309985.1 (replaced)

RefSeq assembly accession:

GCF_000309985.1 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

AENI01

Assembly method:

SOAPdenovo v. 1.04

Genome coverage:

72x

Sequencing technology:

Illumina GA

IDs: 455988 [UID] 455988 [GenBank] 1197998 [RefSeq]

See Genome Information for Brassica rapa

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000309985.3	≠	GCF_000309985.2	CAAS_Brap_v3.01	Chromosome	Latest GenBank, Latest RefSeq
GCA_000309985.2	n/a	n/a	ASM30998v2	Scaffold	Replaced GenBank
GCA_000309985.1	≠	GCF_000309985.1	Brapa_1.0	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	284,129,391
Total ungapped length	273,225,096
Gaps between scaffolds	183
Number of scaffolds	40,432
Scaffold N50	1,960,303
Scaffold L50	40
Number of contigs	51,659
Contig N50	46,175
Contig L50	1,660
Total number of chromosomes and plasmids	11
Number of component sequences (WGS or clone)	51,659

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome A1	CM001634.1	=	NC_024795.1	0
Chromosome A2	CM001635.1	=	NC_024796.1	0
Chromosome A3	CM001636.1	=	NC_024797.1	0
Chromosome A4	CM001637.1	=	NC_024798.1	0
Chromosome A5	CM001638.1	=	NC_024799.1	0
Chromosome A6	CM001639.1	=	NC_024800.1	0
Chromosome A7	CM001640.1	=	NC_024801.1	0
Chromosome A8	CM001641.1	=	NC_024802.1	0
Chromosome A9	CM001642.1	=	NC_024803.1	0
Chromosome A10	CM001643.1	=	NC_024804.1	0
unplaced	n/a	n/a	n/a	40,238

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	283,975,909	40,431	273,071,614	1,971,137	11,227	183
Chromosome A1	28,635,137	31	27,527,682	1,942,182	1,108	30
Chromosome A2	27,864,329	19	26,934,920	1,959,666	951	18
Chromosome A3	31,725,688	11	30,871,027	5,419,876	911	10
Chromosome A4	18,984,343	20	18,355,597	1,689,678	674	19
Chromosome A5	23,960,834	22	23,024,894	1,457,941	949	21
Chromosome A6	26,286,742	16	25,311,690	2,294,431	975	15
Chromosome A7	22,597,724	12	21,896,811	4,360,253	732	11
Chromosome A8	21,613,650	20	20,857,731	2,073,141	779	19
Chromosome A9	37,155,481	36	35,702,739	1,417,104	1,464	35
Chromosome A10	17,599,535	6	17,026,519	4,795,218	615	5
unplaced	27,552,446	40,238	25,562,004	37,401	2,069	0

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Brapa_1.0

See Genome Information for Brassica rapa

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear