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Source database (GenBank or RefSeq) File type

Msp_SC2

Organism name:: Methylocystis sp. SC2 (a-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: SC2
BioSample:: SAMEA2272070
BioProject:: PRJEB120
Submitter:: Max Planck Institute for Terrestrial Microbiology
Date:: 2012/08/20
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000304315.1 (latest)
RefSeq assembly accession:: GCF_000304315.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Genome coverage:: 53x

IDs: 446538 [UID] 439978 [GenBank] 446538 [RefSeq]

See Genome Information for Methylocystis sp. SC2

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000304315.1	=	GCF_000304315.1	Msp_SC2	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::08/12/2023 01:05:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,659
CDSs (total)::3,606
Genes (coding)::3,570
CDSs (with protein)::3,570
Genes (RNA)::53
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::4
Pseudo Genes (total)::36
CDSs (without protein)::36
Pseudo Genes (ambiguous residues)::0 of 36
Pseudo Genes (frameshifted)::11 of 36
Pseudo Genes (incomplete)::29 of 36
Pseudo Genes (internal stop)::3 of 36
Pseudo Genes (multiple problems)::7 of 36
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,773,444
Total ungapped length	3,773,444
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	92.99	80.38	71.98

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Msp_SC2

See Genome Information for Methylocystis sp. SC2

Pathogen Detection Resources

History (Show revision history)

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Genome-Annotation-Data

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