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Panu_2.0

Organism name:
Papio anubis
Isolate:
1X1155
Sex:
female
BioSample:
SAMN02981400
Submitter:
Baylor College of Medicine
Date:
2012/06/05
Synonyms:
papAnu2
Assembly level:
Chromosome
Genome representation:
full
GenBank Assembly ID:
GCA_000264685.1 (latest)
RefSeq Assembly ID:
GCF_000264685.1 (replaced)
RefSeq Assembly and GenBank Assembly Identical:
yes
WGS Project:
AHZZ01
Assembly method:
CABOG v. 6.1; ATLAS-LINK v. 1.0; ATLAS-GAPFILL v. 2.0
Genome coverage:
2.5x Sanger; 4.5x 454; 85x Illumina
Sequencing technology:
Sanger 3730; 454 FLX; Illumina

IDs: 399268 [UID] 383538 [GenBank] 399268 [RefSeq]

See Genome Information for Papio anubis

History (Show revision history)

Comment

The assembled scaffolds were mapped to the Rhesus Macaque Genome (Jan 2006) by alignment. Thus the chromosome numbers in this assembly were derived from the rhesus macaque chromosome numbers.

Global statistics

Total sequence length2,948,380,710
Total assembly gap length55,126,439
Gaps between scaffolds9,250
Number of scaffolds72,500
Scaffold N50528,927
Number of contigs198,931
Contig N5040,262
Total number of chromosomes and plasmids21

Supplemental Content

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Global assembly definition

Download the full sequence report
Assembly Unit: Primary Assembly (GCF_000264695.1)
Molecule nameGenBank IDRefSeq IDUnlocalized
sequences count
Chromosome 1CM001491.1=NC_018152.10
Chromosome 2CM001492.1=NC_018153.10
Chromosome 3CM001493.1=NC_018154.10
Chromosome 4CM001494.1=NC_018155.10
Chromosome 5CM001495.1=NC_018156.10
Chromosome 6CM001496.1=NC_018157.10
Chromosome 7CM001497.1=NC_018158.10
Chromosome 8CM001498.1=NC_018159.10
Chromosome 9CM001499.1=NC_018160.10
Chromosome 10CM001500.1=NC_018161.10
Chromosome 11CM001501.1=NC_018162.10
Chromosome 12CM001502.1=NC_018163.10
Chromosome 13CM001503.1=NC_018164.10
Chromosome 14CM001504.1=NC_018165.10
Chromosome 15CM001505.1=NC_018166.10
Chromosome 16CM001506.1=NC_018167.10
Chromosome 17CM001507.1=NC_018168.10
Chromosome 18CM001508.1=NC_018169.10
Chromosome 19CM001509.1=NC_018170.10
Chromosome 20CM001510.1=NC_018171.10
Chromosome XCM001511.1=NC_018172.10
unplacedn/an/an/a63,229

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1220,367,699693216,867,698610,6219,117692
Chromosome 2187,378,091545184,890,802618,0486,814544
Chromosome 3180,432,695644177,399,200542,4307,613643
Chromosome 4165,299,245449162,962,301649,0366,348448
Chromosome 5178,775,436579176,120,622564,0197,113578
Chromosome 6174,439,528610171,942,374567,0756,567609
Chromosome 7162,156,779506159,779,325601,0466,319505
Chromosome 8139,646,187523137,749,154571,5905,175522
Chromosome 9125,196,307374123,323,252658,3934,954373
Chromosome 1090,941,95031289,384,252543,2883,909311
Chromosome 11132,286,798419130,196,252637,4905,550418
Chromosome 12104,110,932326102,791,708541,4693,706325
Chromosome 13128,036,923441126,232,738530,5834,764440
Chromosome 14123,829,720449122,007,833568,1484,818448
Chromosome 15107,442,819341105,755,177668,7144,393340
Chromosome 1674,645,51424473,146,487551,7093,699243
Chromosome 1790,913,89835889,571,820613,1033,550357
Chromosome 1872,186,19922371,253,560595,9602,638222
Chromosome 1951,301,72532049,496,700317,4503,802319
Chromosome 2071,807,80519970,554,530684,5433,161198
Chromosome X143,131,424716140,842,825372,4235,668715
unplaced224,053,03663,229210,985,6618,18716,7530
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