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ASM18955v1

Organism name:
Sulfolobus islandicus REY15A (crenarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: REY15A
BioSample:
SAMN02603882
BioProject:
PRJNA60485
Submitter:
State Key Laboratory of Microbial Resources, Institute of Microbiology, CAS, Beijing, P. R. China
Date:
2011/02/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000189555.1 (latest)
RefSeq assembly accession:
GCF_000189555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 375318 [UID] 245948 [GenBank] 375318 [RefSeq]

See Genome Information for Sulfolobus islandicus

There are 25 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/09/2023 01:01:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,805
CDSs (total)::2,754
Genes (coding)::2,582
CDSs (with protein)::2,582
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::172
CDSs (without protein)::172
Pseudo Genes (ambiguous residues)::0 of 172
Pseudo Genes (frameshifted)::109 of 172
Pseudo Genes (incomplete)::98 of 172
Pseudo Genes (internal stop)::38 of 172
Pseudo Genes (multiple problems)::61 of 172
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,522,992
Total ungapped length2,522,992
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000189565.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002425.1=NC_017276.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,522,992

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sulfolobus islandicus REY15ASulfolobus islandicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000022485.1Sulfolobus islandicus Y.N.15.51reftype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000022485.1Sulfolobus islandicusreftype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8186.8476.75
Best-match type98.8186.8476.75

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna