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ASM18694v2

Organism name:
Solobacterium moorei F0204 (unclassified Clostridium group RCA59)
Taxonomy check:
OK
Infraspecific name:
Strain: F0204
BioSample:
SAMN00189155
BioProject:
PRJNA43121
Submitter:
Washington University Genome Sequencing Center
Date:
2015/09/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000186945.2 (latest)
RefSeq assembly accession:
GCF_000186945.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AECQ01
Assembly method:
Velvet v. 0.7.57
Genome coverage:
44.9x
Sequencing technology:
Illumina

IDs: 582661 [UID] 2643738 [GenBank] 2680608 [RefSeq]

See Genome Information for Solobacterium moorei

There are 13 assemblies for this organism

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History (Show revision history)

Comment

Solobacterium moorei F0204 (NCBI Accession number for 16S rRNA gene: AB031058) is a member of the Firmicutes division of the domain bacteria and has been isolated from the oral cavity.

This is a reference genome for the Human Microbiome Project. ... This project is co-owned with the Human Microbiome Project DACC.

Bacteria provided by Floyd E. Dewhirst, DDS, PhD and Jacques Izard, PhD (Department of Molecular Genetics, The Forsyth Institute, 140 The Fenway, Boston, Massachusetts, 02115). Funded by NIDCR contract U01-DE016937, "A Foundation for the Oral Microbiome and Metagenome". The original isolate was from the collection of Dr. L. V. Holdeman Moore and the late Dr. W.E. Moore formerly at the Anaerobe Laboratory at The Virginia Polytechnic Institute.

Coding sequences were predicted using GeneMark v3.3 and Glimmer2 v2.13. Intergenic regions not spanned by GeneMark and Glimmer2 were blasted against NCBI's non-redundant (NR) database and predictions generated based on protein alignments. tRNA genes were determined using tRNAscan-SE 1.23 and non-coding RNA genes by RNAmmer-1.2 and Rfam v8.0. Gene names are generated at the contig level and may not necessarily reflect any known order or orientation between contigs. 

The National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH) is funding the sequence characterization of the Solobacterium moorei F0204 genome.
Product names were updated in June 2013  more

Global statistics

Total sequence length2,008,072
Total ungapped length2,007,527
Gaps between scaffolds0
Number of scaffolds33
Scaffold N50181,505
Scaffold L504
Number of contigs66
Contig N50104,271
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)66

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,008,072332,007,527181,505330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Solobacterium moorei F0204Solobacterium moorei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_036323475.1Solobacterium mooreisuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_036323475.1Solobacterium mooreisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.9381.4262.51
Best-match type97.9381.4262.51

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna