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ASM16999v1

Organism name:
Vibrionales bacterium SWAT-3 (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SWAT-3
BioSample:
SAMN02436103
BioProject:
PRJNA19399
Submitter:
Moore Foundation
Date:
2007/04/26
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_000169995.1 (latest)
RefSeq assembly accession:
GCF_000169995.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AAZW01

IDs: 208438 [UID] 208418 [GenBank] 208438 [RefSeq]

See Genome Information for Vibrionales bacterium SWAT-3

Pathogen Detection Resources

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genomes Automatic Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html. Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length5,835,713
Total ungapped length5,835,713
Number of contigs154
Contig N5080,556
Contig L5019
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)154

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced5,835,7131545,835,71380,55600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrionales bacterium SWAT-3Vibrionales bacterium SWAT-3

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024347355.1Vibrio chagasiisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.6773.7977.31

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna