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ASM16213v1

Organism name:
Bacteroides fragilis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 2_1_16
BioSample:
SAMN02463733
BioProject:
PRJNA38347
Submitter:
Broad Institute
Date:
2009/11/06
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000162135.1 (latest)
RefSeq assembly accession:
GCF_000162135.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACPP01

IDs: 195038 [UID] 195018 [GenBank] 195038 [RefSeq]

See Genome Information for Bacteroides fragilis

There are 1152 assemblies for this organism

See more

History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by McDonald, J., Ambrose, C.E., Strauss, J.C. and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, ... Guelph, Ontario, N1G 2W1, Canada).
Bacteria provided by Strauss, J.C., Ambrose, C.E. and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada), as part of the Association of Fusobacterium nucleatum infection with IBD: host and bacterial interactions project, funded by Crohn's and Colitis Foundation of Canada, Grants in Aid of Research Program.
Genome Coverage: 36.10x
Sequencing Technology: 454
Annotated scaffolds were added in November 2009
Product names were updated in June 2013  more

Global statistics

Total sequence length5,236,303
Total ungapped length5,209,697
Gaps between scaffolds0
Number of scaffolds18
Scaffold N501,116,014
Scaffold L502
Number of contigs64
Contig N50157,290
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)64

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,236,303185,209,6971,116,014460

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides fragilisBacteroides fragilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_020097275.1Bacteroides fragilistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020097275.1Bacteroides fragilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2485.6985.26
Best-match type99.2485.6985.26

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna