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ASM15294v2

Organism name:
Polaribacter sp. MED152 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MED152
BioSample:
SAMN02603920
BioProject:
PRJNA13543
Submitter:
The Gordon and Betty Moore Foundation Marine Microbiology Initiative
Date:
2013/03/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000152945.2 (latest)
RefSeq assembly accession:
GCF_000152945.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera v. 1.4
Genome coverage:
9x
Sequencing technology:
Sanger

IDs: 575328 [UID] 566158 [GenBank] 575328 [RefSeq]

See Genome Information for Polaribacter sp. MED152

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from Jarone Pinhassi, Linnaeus University, Sweden (jarone.pinhassi@lnu.se)

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/26/2023 00:40:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,671
CDSs (total)::2,626
Genes (coding)::2,621
CDSs (with protein)::2,621
Genes (RNA)::45
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::35
ncRNAs::4
Pseudo Genes (total)::5
CDSs (without protein)::5
Pseudo Genes (ambiguous residues)::0 of 5
Pseudo Genes (frameshifted)::2 of 5
Pseudo Genes (incomplete)::3 of 5
Pseudo Genes (internal stop)::0 of 5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,961,474
Total ungapped length2,961,474
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000152955.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP004349.1=NC_020830.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,961,474

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Polaribacter sp. MED152Polaribacter sp. MED152

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024362345.1Polaribacter dokdonensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.5189.4285.77

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna