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ASM2620v1

Organism name:
Candidatus Phytoplasma mali (mycoplasmas)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AT
BioSample:
SAMEA2272373
BioProject:
PRJEA25335
Submitter:
Federal Biological Research Center for Agriculture and Forestry
Date:
2008/07/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000026205.1 (latest)
RefSeq assembly accession:
GCF_000026205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 45168 [UID] 27008 [GenBank] 45168 [RefSeq]

See Genome Information for Candidatus Phytoplasma mali

There are 2 assemblies for this organism

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History (Show revision history)

Comment

This project was carried out by
*Max Planck Institute for Molecular Genetics, Berlin, Germany; *Federal Biol. Res. Centre f. Agriculture a. Forestry, Dossenheim, Germany; -------------- Genome Center
 Center: Max Planck Institute for Molecular Genetics 
 Center code: MPIMG
--------------
The annotation was ... added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000026205.1-RS_2024_03_31
Annotation Date::03/31/2024 08:10:20
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::541
CDSs (total)::502
Genes (coding)::500
CDSs (with protein)::500
Genes (RNA)::39
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::32
ncRNAs::1
Pseudo Genes (total)::2
CDSs (without protein)::2
Pseudo Genes (ambiguous residues)::0 of 2
Pseudo Genes (frameshifted)::0 of 2
Pseudo Genes (incomplete)::2 of 2
Pseudo Genes (internal stop)::0 of 2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length601,943
Total ungapped length601,943
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000026215.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CU469464.1=NC_011047.1

Assembly statistics

MoleculeTotal
Length
Chromosome 601,943

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Phytoplasma maliCandidatus Phytoplasma mali

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_032884575.1Candidatus Phytoplasma stylosanthissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.241.261.45

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena