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Annotation data relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny results (Syntonizer software) are available in RhizoScope database via the MaGe annotation system http://www.genoscope.cns.fr/agc/mage/rhizoscope
Each annotation includes a confidence level as ... follow: 1 : Function experimentally demonstrated in the studied organism 2a : Function of homologous gene experimentally demonstrated in an other organism
2b : Function of strongly homologous gene
3 : Function proposed based on presence of conserved amino acid motif, structural feature or limited homology
4 : Homologs of previously reported genes of unknown function 5 : No homology to any previously reported sequences 6 : Doubtful CDS
7 : Gene remnant
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::08/12/2023 01:36:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,734
CDSs (total)::6,672
Genes (coding)::6,624
CDSs (with protein)::6,624
Genes (RNA)::62
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::52
ncRNAs::4
Pseudo Genes (total)::48
CDSs (without protein)::48
Pseudo Genes (ambiguous residues)::0 of 48
Pseudo Genes (frameshifted)::25 of 48
Pseudo Genes (incomplete)::25 of 48
Pseudo Genes (internal stop)::10 of 48
Pseudo Genes (multiple problems)::11 of 48
##Genome-Annotation-Data-END##

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