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IDs: 42888 [UID] 22708 [GenBank] 42888 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4003083 Source DNA and bacteria available from Boris Wawrik (bwawrik@yahoo.com) Contacts: Boris Wawrik (bwawrik@yahoo.com) David Bruce (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL Finished microbial genomes have been curated to close all gaps with greater ... than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The organism was changed from "Desulfatibacillum alkenivorans AK-01" to "Desulfatibacillum aliphaticivorans" in April 2019. The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::11/22/2023 16:46:32Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.6Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::5,335CDSs (total)::5,268Genes (coding)::5,248CDSs (with protein)::5,248Genes (RNA)::67rRNAs::2, 2, 2 (5S, 16S, 23S)complete rRNAs::2, 2, 2 (5S, 16S, 23S)tRNAs::57ncRNAs::4Pseudo Genes (total)::20CDSs (without protein)::20Pseudo Genes (ambiguous residues)::0 of 20Pseudo Genes (frameshifted)::4 of 20Pseudo Genes (incomplete)::18 of 20Pseudo Genes (internal stop)::1 of 20Pseudo Genes (multiple problems)::3 of 20CRISPR Arrays::1##Genome-Annotation-Data-END##
##Taxonomic-Update-Statistics-START##This Genome (query)::GCA_000021905.1Current Name::Desulfatibacillum aliphaticivoransPrevious Name::Desulfatibacillum alkenivorans AK-01Date Updated::2019-04-22Analysis Type::Average Nucleotide Identity (ANI)Analysis 1 (A1)::Query vs. TYPE genome for current nameA1 Genome (subject)::GCA_000429905.1A1 Name::Desulfatibacillum aliphaticivoransA1 ANI::97.50372%A1 Query Coverage::86.42%A1 Subject Coverage::87.09%Analysis 2 (A2)::Query vs. TYPE genome for previous nameA2 Genome (subject)::GCA_900142135.1A2 Name::Desulfatibacillum alkenivorans AK-01A2 ANI::92.85495%A2 Query Coverage::81.84%A2 Subject Coverage::82.5%##Taxonomic-Update-Statistics-END##
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