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ASM2102v1

Organism name:
Laribacter hongkongensis HLHK9 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: HLHK9
BioSample:
SAMN02603956
BioProject:
PRJNA30817
Submitter:
The University of Hong Kong
Date:
2009/04/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000021025.1 (latest)
RefSeq assembly accession:
GCF_000021025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 42048 [UID] 21828 [GenBank] 42048 [RefSeq]

See Genome Information for Laribacter hongkongensis

There are 51 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from Prof. KY Yuen, Dept. of Microbiology, HKU. Email: kyyuen@hkucc.hku.hk

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::09/03/2023 10:38:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,138
CDSs (total)::3,035
Genes (coding)::2,940
CDSs (with protein)::2,940
Genes (RNA)::103
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::78
ncRNAs::4
Pseudo Genes (total)::95
CDSs (without protein)::95
Pseudo Genes (ambiguous residues)::0 of 95
Pseudo Genes (frameshifted)::55 of 95
Pseudo Genes (incomplete)::46 of 95
Pseudo Genes (internal stop)::13 of 95
Pseudo Genes (multiple problems)::17 of 95
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,169,329
Total ungapped length3,169,329
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000021035.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP001154.1=NC_012559.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,169,329

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Laribacter hongkongensis HLHK9Laribacter hongkongensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000423285.1Laribacter hongkongensis DSM 14985type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000423285.1Laribacter hongkongensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.0292.3494.10
Best-match type99.0292.3494.10

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna