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Source database (GenBank or RefSeq) File type

ASM906v1

Organism name:: Yersinia pestis CO92 (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: CO92
BioSample:: SAMEA1705942
BioProject:: PRJNA34
Submitter:: Sanger Institute
Date:: 2003/05/06
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
GenBank assembly accession:: GCA_000009065.1 (latest)
RefSeq assembly accession:: GCF_000009065.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 30608 [UID] 9868 [GenBank] 30608 [RefSeq]

See Genome Information for Yersinia pestis

Pathogen Detection Resources

There are 1041 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000009065.1	=	GCF_000009065.1	ASM906v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Notes:
Details of Y. pestis sequencing at the Sanger Centre are available on the World Wide Web.
(URL, http://www.sanger.ac.uk/Projects/Y_pestis/)

Original CON assembly
join(AJ414141.1:1..288050,AJ414142.1:51..214050,AJ414143.1:51..201050, AJ414144.1:51..208050,AJ414145.1:51..208050,AJ414146.1:51..210050, AJ414147.1:51..199050,AJ414148.1:51..210050,AJ414149.1:51..193050, AJ414150.1:51..335050,AJ414151.1:51..334050,AJ414152.1:51..313050, AJ414153.1:51..258050,AJ414154.1:51..204050,AJ414155.1:51..205050, AJ414156.1:51..220050,AJ414157.1:51..216040,AJ414158.1:41..235050, AJ414159.1:51..199050,AJ414160.1:51..203728)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP ... can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::06/04/2023 08:56:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,401
CDSs (total)::4,301
Genes (coding)::4,108
CDSs (with protein)::4,108
Genes (RNA)::100
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::12
Pseudo Genes (total)::193
CDSs (without protein)::193
Pseudo Genes (ambiguous residues)::0 of 193
Pseudo Genes (frameshifted)::81 of 193
Pseudo Genes (incomplete)::134 of 193
Pseudo Genes (internal stop)::25 of 193
Pseudo Genes (multiple problems)::39 of 193
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,829,855
Total ungapped length	4,829,855
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	AL590842.1	=	NC_003143.1
Plasmid pCD1	AL117189.1	=	NC_003131.1
Plasmid pMT1	AL117211.1	=	NC_003134.1
Plasmid pPCP1	AL109969.1	=	NC_003132.1

Molecule	Total Length
All	4,829,855
Chromosome	4,653,728
Plasmid pCD1	70,305
Plasmid pMT1	96,210
Plasmid pPCP1	9,612

	ANI	Query coverage	Subject coverage
Declared type	99.98	97.65	98.73
Best-match type	99.98	97.65	98.73

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ASM906v1

See Genome Information for Yersinia pestis

Pathogen Detection Resources

There are 1041 assemblies for this organism

History (Show revision history)

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