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Source database (GenBank or RefSeq) File type

ASM856v1

Organism name:: Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 (bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: R1
BioSample:: SAMN02603976
BioProject:: PRJNA65
Submitter:: TIGR
Date:: 2000/12/11
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_000008565.1 (latest)
RefSeq assembly accession:: GCF_000008565.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes

IDs: 30148 [UID] 9368 [GenBank] 30148 [RefSeq]

See Genome Information for Deinococcus radiodurans

Pathogen Detection Resources

There are 17 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000008565.1	=	GCF_000008565.1	ASM856v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::03/09/2023 01:23:48
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,290
CDSs (total)::3,228
Genes (coding)::3,128
CDSs (with protein)::3,128
Genes (RNA)::62
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::50
ncRNAs::3
Pseudo Genes (total)::100
CDSs (without protein)::100
Pseudo Genes (ambiguous residues)::0 of 100
Pseudo Genes (frameshifted)::66 of 100
Pseudo Genes (incomplete)::33 of 100
Pseudo Genes (internal stop)::3 of 100
Pseudo Genes (multiple problems)::2 of 100
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,284,156
Total ungapped length	3,284,156
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	AE000513.1	=	NC_001263.1
Chromosome 2	AE001825.1	=	NC_001264.1
Plasmid CP1	AE001827.1	=	NC_000959.1
Plasmid MP1	AE001826.1	=	NC_000958.1

Molecule	Total Length
All	3,284,156
Chromosome 1	2,648,638
Chromosome 2	412,348
Plasmid CP1	45,704
Plasmid MP1	177,466

	ANI	Query coverage	Subject coverage
Declared type	99.97	99.49	97.69
Best-match type	99.97	99.49	97.69

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ASM856v1

See Genome Information for Deinococcus radiodurans

Pathogen Detection Resources

There are 17 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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Average Nucleotide Identity (ANI) data

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