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Brachypodium_distachyon_v2.0

Organism name:
Brachypodium distachyon (stiff brome)
Infraspecific name:
Strain: Bd21
BioSample:
SAMN02981254
BioProject:
PRJNA32607
Submitter:
JGI-PGF
Date:
2015/10/29
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000005505.2 (replaced)
RefSeq assembly accession:
GCF_000005505.2 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd
  • Data displayed for RefSeq version
WGS Project:
ADDN02
Assembly method:
ARACHNE v. 20071016_modified
Genome coverage:
9.43x
Sequencing technology:
ABI 3739

IDs: 571551 [UID] 2555118 [GenBank] 2690628 [RefSeq]

See Genome Information for Brachypodium distachyon

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length272,132,505
Total ungapped length271,525,233
Gaps between scaffolds0
Number of scaffolds28
Scaffold N5059,384,932
Scaffold L503
Number of contigs486
Contig N506,404,379
Contig L5012
Total number of chromosomes and plasmids6
Number of component sequences (WGS or clone)486

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000005515.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000880.2=NC_016131.20
Chromosome 2CM000881.2=NC_016132.20
Chromosome 3CM000882.2=NC_016133.20
Chromosome 4CM000883.2=NC_016134.20
Chromosome 5CM000884.2=NC_016135.20
unplacedn/an/an/a22

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All271,997,30627271,390,03459,384,9324580
Chromosome 175,119,905175,083,74275,119,905350
Chromosome 259,384,932159,257,97259,384,932420
Chromosome 359,935,730159,741,95859,935,7301400
Chromosome 448,772,488148,590,92048,772,4881930
Chromosome 528,563,423128,536,30728,563,423290
unplaced220,82822179,13519,724190
MoleculeTotal
Length
Chloroplast Pltd135,199