Display Settings:

Format

Send to:

Choose Destination

EquCab2.0

Organism name:
Equus caballus
Infraspecific name:
Breed: thoroughbred
Isolate:
Twilight
Sex:
female
BioSample:
SAMN02953672
Submitter:
The Genome Assembly Team
Date:
2007/10/29
Synonyms:
equCab2
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000002305.1 (latest)
RefSeq assembly accession:
GCF_000002305.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
Data displayed for RefSeq version
WGS Project:
AAWR02

IDs: 286598 [UID] 286568 [GenBank] 286598 [RefSeq]

See Genome Information for Equus caballus

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

This version of the project represents approximately 6.8x coverage of the genome.
This assembly of the horse genome is EquCab2.0.  It is an assembly of contigs AAWR02000001-AAWR02055316 into chromosomes CM000377-CM000408 and unlinked multi-component scaffolds DS497970-DS499507.

Global statistics

Total sequence length2,474,929,062
Total assembly gap length46,138,889
Gaps between scaffolds51
Number of scaffolds9,688
Scaffold N5046,749,900
Number of contigs55,317
Contig N50112,381
Total number of chromosomes and plasmids33

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000000165.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000377.2=NC_009144.20
Chromosome 2CM000378.2=NC_009145.20
Chromosome 3CM000379.2=NC_009146.20
Chromosome 4CM000380.2=NC_009147.20
Chromosome 5CM000381.2=NC_009148.20
Chromosome 6CM000382.2=NC_009149.20
Chromosome 7CM000383.2=NC_009150.20
Chromosome 8CM000384.2=NC_009151.20
Chromosome 9CM000385.2=NC_009152.20
Chromosome 10CM000386.2=NC_009153.20
Chromosome 11CM000387.2=NC_009154.20
Chromosome 12CM000388.2=NC_009155.20
Chromosome 13CM000389.2=NC_009156.20
Chromosome 14CM000390.2=NC_009157.20
Chromosome 15CM000391.2=NC_009158.20
Chromosome 16CM000392.2=NC_009159.20
Chromosome 17CM000393.2=NC_009160.20
Chromosome 18CM000394.2=NC_009161.20
Chromosome 19CM000395.2=NC_009162.20
Chromosome 20CM000396.2=NC_009163.20
Chromosome 21CM000397.2=NC_009164.20
Chromosome 22CM000398.2=NC_009165.20
Chromosome 23CM000399.2=NC_009166.20
Chromosome 24CM000400.2=NC_009167.20
Chromosome 25CM000401.2=NC_009168.20
Chromosome 26CM000402.2=NC_009169.20
Chromosome 27CM000403.2=NC_009170.20
Chromosome 28CM000404.2=NC_009171.20
Chromosome 29CM000405.2=NC_009172.20
Chromosome 30CM000406.2=NC_009173.20
Chromosome 31CM000407.2=NC_009174.20
Chromosome XCM000408.2=NC_009175.20
unplacedn/an/an/a9,604

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1185,838,1093183,561,85595,443,2313,2202
Chromosome 2120,857,6874118,957,54235,450,8002,4073
Chromosome 3119,479,9202118,104,91082,887,8271,9801
Chromosome 4108,569,0754107,397,07359,365,9101,6903
Chromosome 599,680,356597,742,53750,633,9511,7914
Chromosome 684,719,076483,858,03825,959,9591,4653
Chromosome 798,542,428396,472,43250,379,0232,0432
Chromosome 894,057,673492,896,12421,760,9681,7923
Chromosome 983,561,422482,750,21642,746,1131,2493
Chromosome 1083,980,604282,682,04355,761,5231,9351
Chromosome 1161,308,211260,492,92860,101,6781,5141
Chromosome 1233,091,231431,940,81813,190,6418563
Chromosome 1342,578,167641,521,6227,313,9281,1585
Chromosome 1493,904,894192,877,42993,904,8941,5300
Chromosome 1591,571,448290,790,06088,184,0441,4051
Chromosome 1687,365,405286,752,21564,028,3481,3951
Chromosome 1780,757,907280,151,93563,006,6821,1581
Chromosome 1882,527,541181,597,28282,527,5411,2230
Chromosome 1959,975,221159,453,84559,975,2218380
Chromosome 2064,166,202163,448,15264,166,2021,1480
Chromosome 2157,723,302257,021,11353,663,9629631
Chromosome 2249,946,797249,278,35738,411,8681,0391
Chromosome 2355,726,280155,051,33855,726,2808600
Chromosome 2446,749,900145,792,70846,749,9009360
Chromosome 2539,536,964138,841,94439,536,9649290
Chromosome 2641,866,177141,476,97541,866,1776110
Chromosome 2739,960,074139,469,83439,960,0745530
Chromosome 2846,177,339245,531,40639,708,4469501
Chromosome 2933,672,925133,264,13733,672,9255290
Chromosome 3030,062,385229,835,55520,629,1614941
Chromosome 3124,984,650224,827,57414,342,7103611
Chromosome X124,114,07710121,614,48619,864,2852,2319
unplaced107,858,9559,60493,319,03052,9723,3760
MoleculeTotal
Length
Mitochondrion MT16,660