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NCBI33

Description:
NCBI33 with the DR51 & DR52 alternate MHC haplotype scaffolds in alt-locus assembly-units
Organism name:
Homo sapiens (human)
Submitter:
International Human Genome Sequencing Consortium
Date:
2003/04/12
Assembly type:
haploid-with-alt-loci
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
n/a
RefSeq assembly accession:
GCF_000001405.8 (replaced)
RefSeq assembly and GenBank assembly identical:
n/a

IDs: 521878 [UID] 521878 [RefSeq]

See Genome Information for Homo sapiens

There are 42 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length3,104,781,186
Total assembly gap length238,535,991
Gaps between scaffolds435
Number of scaffolds545
Scaffold N5025,443,670
Scaffold L5033
Number of contigs2,242
Contig N5023,437,594
Contig L5034
Total number of chromosomes and plasmids24

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
DR51
DR52
Assembly Unit: Primary Assembly (GCF_000001305.8)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1n/an/aNC_000001.453
Chromosome 2n/an/an/a11
Chromosome 3n/an/aNC_000003.52
Chromosome 4n/an/aNC_000004.59
Chromosome 5n/an/aNC_000005.40
Chromosome 6n/an/aNC_000006.58
Chromosome 7n/an/aNC_000007.77
Chromosome 8n/an/aNC_000008.52
Chromosome 9n/an/aNC_000009.511
Chromosome 10n/an/aNC_000010.43
Chromosome 11n/an/aNC_000011.41
Chromosome 12n/an/aNC_000012.53
Chromosome 13n/an/aNC_000013.52
Chromosome 14n/an/aNC_000014.40
Chromosome 15n/an/aNC_000015.42
Chromosome 16n/an/aNC_000016.41
Chromosome 17n/an/aNC_000017.52
Chromosome 18n/an/aNC_000018.40
Chromosome 19n/an/aNC_000019.52
Chromosome 20n/an/aNC_000020.50
Chromosome 21n/an/aNC_000021.30
Chromosome 22n/an/aNC_000022.40
Chromosome Xn/an/aNC_000023.414
Chromosome Yn/an/aNC_000024.31
unplacedn/an/an/a4

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1AllAssembled moleculeUnlocalized scaffolds255,166,563245,203,8989,962,6651479453228,623,680218,712,8989,910,7825,135,6715,417,179184,6445381052896960
Chromosome 2AllAssembled moleculeUnlocalized scaffolds244,279,060243,315,028964,032332211238,006,308237,043,677962,63168,373,97468,373,974172,8071931622220
Chromosome 3AllAssembled moleculeUnlocalized scaffolds199,784,916199,411,731373,18517152193,979,218193,607,233371,98529,247,56629,247,566201,7251421219190
Chromosome 4AllAssembled moleculeUnlocalized scaffolds192,430,017191,610,523819,49427189187,395,448186,580,523814,92523,437,59423,437,594139,0785005017170
Chromosome 5Assembled molecule180,967,29512177,524,97221,842,058512
Chromosome 6AllAssembled moleculeUnlocalized scaffolds173,355,444170,740,5412,614,90319118169,467,776166,880,5412,587,23548,884,76748,884,767429,695279027913130
Chromosome 7AllAssembled moleculeUnlocalized scaffolds159,188,864158,431,299757,56520137155,298,951154,546,299752,65247,493,54047,493,540149,4662802812120
Chromosome 8AllAssembled moleculeUnlocalized scaffolds146,286,454145,908,738377,71619172142,071,153141,694,337376,81637,699,98737,699,987199,31590917170
Chromosome 9AllAssembled moleculeUnlocalized scaffolds136,542,295134,505,8192,036,476554411117,210,036115,187,7192,022,31734,895,69534,895,695185,143140113947470
Chromosome 10AllAssembled moleculeUnlocalized scaffolds136,091,123135,480,874610,24929263131,316,723130,710,874605,84930,112,63030,112,630179,0134404429290
Chromosome 11AllAssembled moleculeUnlocalized scaffolds135,128,894134,978,784150,11011101130,858,730130,709,420149,31038,488,55038,488,550150,11091810100
Chromosome 12AllAssembled moleculeUnlocalized scaffolds133,954,865133,464,434490,43114113129,815,054129,328,334486,72032,815,93432,815,934165,5933413313130
Chromosome 13AllAssembled moleculeUnlocalized scaffolds114,516,315114,151,656364,65986295,872,20495,511,656360,54855,334,81755,334,817184,59041041990
Chromosome 14Assembled molecule105,311,216187,191,21687,191,21603
Chromosome 15AllAssembled moleculeUnlocalized scaffolds100,430,144100,114,055316,0891311281,431,54481,117,055314,48953,614,54953,614,549182,8961601612120
Chromosome 16AllAssembled moleculeUnlocalized scaffolds90,020,35989,995,99924,3601413179,915,05579,890,79524,26019,938,05819,938,05824,36032113130
Chromosome 17AllAssembled moleculeUnlocalized scaffolds81,978,65681,691,216287,4401513277,765,18877,480,855284,33317,920,31417,920,314182,9453103114140
Chromosome 18Assembled molecule77,753,510674,534,53120,074,19905
Chromosome 19AllAssembled moleculeUnlocalized scaffolds64,042,71863,790,860251,85864256,032,71855,780,860251,85831,383,02931,383,029159,169000550
Chromosome 20Assembled molecule63,644,868759,424,99024,982,29007
Chromosome 21Assembled molecule46,976,537533,924,74728,602,55656
Chromosome 22Assembled molecule49,476,9721134,352,07223,178,213014
Chromosome XAllAssembled moleculeUnlocalized scaffolds156,843,278152,634,1664,209,112432914151,822,058147,686,6664,135,39212,664,86519,044,037548,553446644032320
Chromosome YAllAssembled moleculeUnlocalized scaffolds51,152,80550,961,097191,70876122,952,80522,761,097191,7086,380,5326,380,532191,708000880
unplacedAssembled molecule461,0774461,07799,95200
Unit NameScaffold
Count
Total
Length
Ungapped
Length
Scaffold
N50
Spanned
Gaps
DR5114,265,2434,265,2434,265,2430
DR5214,731,6984,731,6984,731,6980