U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



38490_H02

Organism name:
Citrobacter braakii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NCTC9067
BioSample:
SAMEA3376910
BioProject:
PRJEB6403
Submitter:
SC
Date:
2018/08/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_900449345.1 (latest)
RefSeq assembly accession:
GCF_900449345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
UGBZ01
Genome coverage:
100x

IDs: 1844611 [UID] 6985788 [GenBank] 7006638 [RefSeq]

See Genome Information for Citrobacter braakii

There are 267 assemblies for this organism

See more

History (Show revision history)

Comment

The organism was changed from 'Escherichia coli' to 'Citrobacter braakii' in July 2020.

Taxonomic-Update-Statistics

##Taxonomic-Update-Statistics-START##
This Genome (query)::GCA_900449345.1
Current Name::Citrobacter braakii
Previous Name::Escherichia coli
Date Updated::2020-07-31
Analysis Type::Average Nucleotide Identity (ANI)
Analysis 1 (A1)::Query vs. TYPE genome for current name
A1 Genome (subject)::GCA_002075345.1
A1 Name::Citrobacter braakii
A1 ANI::99.17%
A1 Query Coverage::84.63%
A1 Subject Coverage::80.3%
Analysis 2 (A2)::Query vs. TYPE genome for previous name
A2 Genome (subject)::GCA_003697165.2
A2 Name::Escherichia coli
A2 ANI::83.14%
A2 Query Coverage::40.86%
A2 Subject Coverage::42.94%
##Taxonomic-Update-Statistics-END##

Global statistics

Total sequence length5,290,509
Total ungapped length5,290,509
Number of contigs2
Contig N505,234,128
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,290,50925,290,5095,234,12800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Citrobacter braakiiCitrobacter braakii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019048805.1Citrobacter braakiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019048805.1Citrobacter braakiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1885.2580.83
Best-match type99.1885.2580.83

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna