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ASM2243930v1

Organism name:
Klebsiella pneumoniae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ARLG-3181
BioSample:
SAMN15868955
BioProject:
PRJNA658369
Submitter:
Hackensack-Meridian Health Center for Discovery and Innovation
Date:
2022/03/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_022439305.1 (latest)
RefSeq assembly accession:
GCF_022439305.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye v. 2.7
Expected final version:
yes
Genome coverage:
209x
Sequencing technology:
Oxford Nanopore GridION

IDs: 12252501 [UID] 32084728 [GenBank] 32128308 [RefSeq]

See Genome Information for Klebsiella pneumoniae

Pathogen Detection Resources

There are 65433 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/11/2021 18:05:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,603
CDSs (total)::5,480
Genes (coding)::5,388
CDSs (with protein)::5,388
Genes (RNA)::123
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::87
ncRNAs::11
Pseudo Genes (total)::92
CDSs (without protein)::92
Pseudo Genes (ambiguous residues)::0 of 92
Pseudo Genes (frameshifted)::31 of 92
Pseudo Genes (incomplete)::61 of 92
Pseudo Genes (internal stop)::14 of 92
Pseudo Genes (multiple problems)::14 of 92
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,633,878
Total ungapped length5,633,878
Total number of chromosomes and plasmids5

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_022439315.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP067939.1=NZ_CP067939.1
Plasmid pC235_1CP067940.1=NZ_CP067940.1
Plasmid pC235_2CP067941.1=NZ_CP067941.1
Plasmid pC235_3CP067942.1=NZ_CP067942.1
Plasmid pC235_4CP067943.1=NZ_CP067943.1

Assembly statistics

MoleculeTotal
Length
All5,633,878
Chromosome 5,276,487
Plasmid pC235_1164,535
Plasmid pC235_2130,829
Plasmid pC235_346,756
Plasmid pC235_415,271

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniaeKlebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000788015.1Klebsiella pneumoniae subsp. pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000788015.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9596.7195.16
Best-match type99.9596.7195.16

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna