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ASM2243884v1

Organism name:
Klebsiella pneumoniae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ARLG-3208
BioSample:
SAMN15868977
BioProject:
PRJNA658369
Submitter:
Hackensack-Meridian Health Center for Discovery and Innovation
Date:
2022/03/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • from large multi-isolate project
GenBank assembly accession:
GCA_022438845.1 (latest)
RefSeq assembly accession:
GCF_022438845.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye v. 2.7
Expected final version:
yes
Genome coverage:
217x
Sequencing technology:
Oxford Nanopore GridION

IDs: 12252281 [UID] 32084268 [GenBank] 32128528 [RefSeq]

See Genome Information for Klebsiella pneumoniae

Pathogen Detection Resources

There are 65423 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/11/2021 16:05:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,862
CDSs (total)::5,738
Genes (coding)::5,630
CDSs (with protein)::5,630
Genes (RNA)::124
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::87
ncRNAs::12
Pseudo Genes (total)::108
CDSs (without protein)::108
Pseudo Genes (ambiguous residues)::0 of 108
Pseudo Genes (frameshifted)::43 of 108
Pseudo Genes (incomplete)::62 of 108
Pseudo Genes (internal stop)::18 of 108
Pseudo Genes (multiple problems)::15 of 108
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,933,196
Total ungapped length5,933,196
Total number of chromosomes and plasmids6

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_022438855.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP067871.1=NZ_CP067871.1
Plasmid pC262_1CP067872.1=NZ_CP067872.1
Plasmid pC262_2CP067873.1=NZ_CP067873.1
Plasmid pC262_3CP067874.1=NZ_CP067874.1
Plasmid pC262_4CP067875.1=NZ_CP067875.1
Plasmid pC262_5CP067876.1=NZ_CP067876.1

Assembly statistics

MoleculeTotal
Length
All5,933,196
Chromosome 5,452,389
Plasmid pC262_1193,360
Plasmid pC262_2118,543
Plasmid pC262_3110,253
Plasmid pC262_443,380
Plasmid pC262_515,271

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniaeKlebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000788015.1Klebsiella pneumoniae subsp. pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000788015.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9894.1897.59
Best-match type99.9894.1897.59

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna