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Source database (GenBank or RefSeq) File type

ASM2243435v1

Organism name:

Klebsiella pneumoniae (enterobacteria)

Taxonomy check:

Infraspecific name:

Strain: ARLG-8043

BioSample:

SAMN17131924

BioProject:

PRJNA658369

Submitter:

Hackensack-Meridian Health Center for Discovery and Innovation

Date:

2022/03/01

Assembly type:

Assembly level:

Complete Genome

Genome representation:

full

Excluded from RefSeq:

from large multi-isolate project

GenBank assembly accession:

GCA_022434355.1 (latest)

RefSeq assembly accession:

GCF_022434355.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

Assembly method:

Flye v. 2.7

Expected final version:

yes

Genome coverage:

281x

Sequencing technology:

Oxford Nanopore GridION

IDs: 12248701 [UID] 32071608 [GenBank] 32116028 [RefSeq]

See Genome Information for Klebsiella pneumoniae

Pathogen Detection Resources

There are 65433 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_022434355.1	=	GCF_022434355.1	ASM2243435v1	Complete Genome	Latest GenBank, RefSeq suppressed

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::01/11/2021 15:02:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,521
CDSs (total)::5,397
Genes (coding)::5,325
CDSs (with protein)::5,325
Genes (RNA)::124
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::87
ncRNAs::12
Pseudo Genes (total)::72
CDSs (without protein)::72
Pseudo Genes (ambiguous residues)::0 of 72
Pseudo Genes (frameshifted)::32 of 72
Pseudo Genes (incomplete)::39 of 72
Pseudo Genes (internal stop)::14 of 72
Pseudo Genes (multiple problems)::13 of 72
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,572,894
Total ungapped length	5,572,894
Total number of chromosomes and plasmids	4

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP067521.1	=	NZ_CP067521.1
Plasmid pC703_1	CP067522.1	=	NZ_CP067522.1
Plasmid pC703_2	CP067523.1	=	NZ_CP067523.1
Plasmid pC703_3	CP067524.1	=	NZ_CP067524.1

Molecule	Total Length
All	5,572,894
Chromosome	5,352,152
Plasmid pC703_1	163,521
Plasmid pC703_2	43,380
Plasmid pC703_3	13,841

	ANI	Query coverage	Subject coverage
Declared type	99.96	98.04	95.43
Best-match type	99.96	98.04	95.43

Assembly

Genome Assembly

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Download Assembly

ASM2243435v1

See Genome Information for Klebsiella pneumoniae

Pathogen Detection Resources

There are 65433 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result