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ASM2073664v1

Organism name:
Burkholderia dolosa (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_1545
BioSample:
SAMN22091642
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/11/03
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_020736645.1 (latest)
RefSeq assembly accession:
GCF_020736645.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 9.0.0, HGAP v. 4.0
Genome coverage:
895.80x
Sequencing technology:
Pacbio; Illumina

IDs: 11375171 [UID] 29944358 [GenBank] 29956618 [RefSeq]

See Genome Information for Burkholderia dolosa

Pathogen Detection Resources

There are 28 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/23/2023 20:44:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,819
CDSs (total)::5,733
Genes (coding)::5,638
CDSs (with protein)::5,638
Genes (RNA)::86
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::67
ncRNAs::4
Pseudo Genes (total)::95
CDSs (without protein)::95
Pseudo Genes (ambiguous residues)::0 of 95
Pseudo Genes (frameshifted)::45 of 95
Pseudo Genes (incomplete)::74 of 95
Pseudo Genes (internal stop)::11 of 95
Pseudo Genes (multiple problems)::31 of 95
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,411,581
Total ungapped length6,411,381
Gaps between scaffolds0
Number of scaffolds3
Scaffold N503,408,990
Scaffold L501
Number of contigs3
Contig N503,408,890
Contig L501
Total number of chromosomes and plasmids3
Number of component sequences (WGS or clone)3

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_020736655.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP086006.1=NZ_CP086006.1
Chromosome 2CP086005.1=NZ_CP086005.1
Chromosome 3CP086004.1=NZ_CP086004.1

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All6,411,58136,411,3813,408,99020
Chromosome 13,408,99013,408,8903,408,99010
Chromosome 22,168,17312,168,0732,168,17310
Chromosome 3834,4181834,418834,41800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderia dolosaBurkholderia dolosa

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019930785.1Burkholderia dolosatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019930785.1Burkholderia dolosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9996.6199.98
Best-match type99.9996.6199.98

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna