U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1690427v1

Organism name:
Klebsiella pneumoniae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_1328
BioSample:
SAMN16357470
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/02/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_016904275.1 (latest)
RefSeq assembly accession:
GCF_016904275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 8.0.0, HGAP v. 4
Genome coverage:
688.63x
Sequencing technology:
Pacbio; Illumina

IDs: 9297391 [UID] 25031048 [GenBank] 25062638 [RefSeq]

See Genome Information for Klebsiella pneumoniae

Pathogen Detection Resources

There are 65463 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/03/2023 03:56:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,781
CDSs (total)::5,656
Genes (coding)::5,521
CDSs (with protein)::5,521
Genes (RNA)::125
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::88
ncRNAs::12
Pseudo Genes (total)::135
CDSs (without protein)::135
Pseudo Genes (ambiguous residues)::0 of 135
Pseudo Genes (frameshifted)::60 of 135
Pseudo Genes (incomplete)::79 of 135
Pseudo Genes (internal stop)::17 of 135
Pseudo Genes (multiple problems)::18 of 135
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,758,155
Total ungapped length5,758,155
Total number of chromosomes and plasmids6

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016904285.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP070087.1=NZ_CP070087.1
Plasmid unnamed1CP070083.1=NZ_CP070083.1
Plasmid unnamed2CP070086.1=NZ_CP070086.1
Plasmid unnamed3CP070084.1=NZ_CP070084.1
Plasmid unnamed4CP070082.1=NZ_CP070082.1
Plasmid unnamed5CP070085.1=NZ_CP070085.1

Assembly statistics

MoleculeTotal
Length
All5,758,155
Chromosome 5,442,514
Plasmid unnamed1208,838
Plasmid unnamed243,380
Plasmid unnamed342,567
Plasmid unnamed415,271
Plasmid unnamed55,585

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniaeKlebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000788015.1Klebsiella pneumoniae subsp. pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000788015.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9897.5698.11
Best-match type99.9897.5698.11

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna