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ASM1690337v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_1286
BioSample:
SAMN16357428
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/02/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_016903375.1 (latest)
RefSeq assembly accession:
GCF_016903375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 8.0.0, HGAP v. 4
Genome coverage:
1520.67x
Sequencing technology:
Pacbio; Illumina

IDs: 9296941 [UID] 25030148 [GenBank] 25061018 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 266864 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/17/2023 05:01:12
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,075
CDSs (total)::4,949
Genes (coding)::4,749
CDSs (with protein)::4,749
Genes (RNA)::126
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::94
ncRNAs::10
Pseudo Genes (total)::200
CDSs (without protein)::200
Pseudo Genes (ambiguous residues)::0 of 200
Pseudo Genes (frameshifted)::79 of 200
Pseudo Genes (incomplete)::130 of 200
Pseudo Genes (internal stop)::52 of 200
Pseudo Genes (multiple problems)::57 of 200
Pseudo Genes (short protein)::5 of 200
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,168,953
Total ungapped length5,168,953
Total number of chromosomes and plasmids8

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016903385.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP069893.1=NZ_CP069893.1
Plasmid unnamed1CP069894.1=NZ_CP069894.1
Plasmid unnamed2CP069895.1=NZ_CP069895.1
Plasmid unnamed3CP069896.1=NZ_CP069896.1
Plasmid unnamed4CP069897.1=NZ_CP069897.1
Plasmid unnamed5CP069898.1=NZ_CP069898.1
Plasmid unnamed6CP069899.1=NZ_CP069899.1
Plasmid unnamed7CP069900.1=NZ_CP069900.1

Assembly statistics

MoleculeTotal
Length
All5,168,953
Chromosome 5,002,346
Plasmid unnamed1153,221
Plasmid unnamed21,552
Plasmid unnamed35,014
Plasmid unnamed42,892
Plasmid unnamed51,716
Plasmid unnamed61,171
Plasmid unnamed71,041

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002853715.1Escherichia colicladeref

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002853715.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8093.7494.16
Best-match type99.8093.7494.16

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna