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ASM1690323v1

Organism name:
Klebsiella pneumoniae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_1324
BioSample:
SAMN16357466
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/02/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_016903235.1 (latest)
RefSeq assembly accession:
GCF_016903235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 8.0.0, HGAP v. 4
Genome coverage:
907.16x
Sequencing technology:
Pacbio; Illumina

IDs: 9296871 [UID] 25030008 [GenBank] 25062318 [RefSeq]

See Genome Information for Klebsiella pneumoniae

Pathogen Detection Resources

There are 65463 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/03/2023 03:57:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,620
CDSs (total)::5,493
Genes (coding)::5,346
CDSs (with protein)::5,346
Genes (RNA)::127
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::88
ncRNAs::14
Pseudo Genes (total)::147
CDSs (without protein)::147
Pseudo Genes (ambiguous residues)::0 of 147
Pseudo Genes (frameshifted)::68 of 147
Pseudo Genes (incomplete)::95 of 147
Pseudo Genes (internal stop)::13 of 147
Pseudo Genes (multiple problems)::28 of 147
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,650,258
Total ungapped length5,650,258
Total number of chromosomes and plasmids8

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016903245.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP069853.1=NZ_CP069853.1
Plasmid unnamed1CP069854.1=NZ_CP069854.1
Plasmid unnamed2CP069855.1=NZ_CP069855.1
Plasmid unnamed3CP069860.1=NZ_CP069860.1
Plasmid unnamed4CP069856.1=NZ_CP069856.1
Plasmid unnamed5CP069857.1=NZ_CP069857.1
Plasmid unnamed6CP069858.1=NZ_CP069858.1
Plasmid unnamed7CP069859.1=NZ_CP069859.1

Assembly statistics

MoleculeTotal
Length
All5,650,258
Chromosome 5,361,696
Plasmid unnamed1137,344
Plasmid unnamed2104,812
Plasmid unnamed318,968
Plasmid unnamed417,733
Plasmid unnamed55,430
Plasmid unnamed63,005
Plasmid unnamed71,270

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniaeKlebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000788015.1Klebsiella pneumoniae subsp. pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000788015.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2187.7786.61
Best-match type99.2187.7786.61

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna