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ASM808636v1

Organism name:
Aggregatibacter actinomycetemcomitans (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: HK_907
BioSample:
SAMN12492049
BioProject:
PRJNA560478
Submitter:
Department of Molecular Medicine (MOMA) - Aarhus University Hospital
Date:
2019/08/26
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_008086365.1 (latest)
RefSeq assembly accession:
GCF_008086365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
86x
Sequencing technology:
Illumina

IDs: 4421611 [UID] 13399958 [GenBank] 13435478 [RefSeq]

See Genome Information for Aggregatibacter actinomycetemcomitans

There are 187 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/16/2023 01:43:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,362
CDSs (total)::2,292
Genes (coding)::2,116
CDSs (with protein)::2,116
Genes (RNA)::70
rRNAs::6, 6, 5 (5S, 16S, 23S)
complete rRNAs::6, 6, 5 (5S, 16S, 23S)
tRNAs::49
ncRNAs::4
Pseudo Genes (total)::176
CDSs (without protein)::176
Pseudo Genes (ambiguous residues)::0 of 176
Pseudo Genes (frameshifted)::92 of 176
Pseudo Genes (incomplete)::81 of 176
Pseudo Genes (internal stop)::40 of 176
Pseudo Genes (multiple problems)::32 of 176
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,316,234
Total ungapped length2,316,234
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_008086375.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP043003.1=NZ_CP043003.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,316,234

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aggregatibacter actinomycetemcomitansAggregatibacter actinomycetemcomitans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000372365.1Aggregatibacter actinomycetemcomitans DSM 8324type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000372365.1Aggregatibacter actinomycetemcomitanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.4881.5090.50
Best-match type97.4881.5090.50

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna