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ASM283639v1

Organism name:: Nocardioides alpinus (high G+C Gram-positive bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: DSM 23325
BioSample:: SAMN08125759
BioProject:: PRJNA420923
Submitter:: University of Alaska Fairbanks
Date:: 2017/12/12
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_002836395.1 (latest)
RefSeq assembly accession:: GCF_002836395.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: PJBV01
Assembly method:: Unicycler v. 0.3.1
Expected final version:: no
Genome coverage:: 37x
Sequencing technology:: Illumina MiSeq

IDs: 1488681 [UID] 5773678 [GenBank] 5795728 [RefSeq]

See Genome Information for Nocardioides alpinus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002836395.1	=	GCF_002836395.1	ASM283639v1	Contig	Latest GenBank, Latest RefSeq

Comment

Bacteria available from Dr. Eric Collins, University of Alaska Fairbanks.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::12/07/2017 16:50:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,341
CDS (total)::4,289
Genes (coding)::4,215
CDS (coding)::4,215
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs:: 
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::74
Pseudo Genes (ambiguous residues)::0 of 74
Pseudo Genes (frameshifted)::20 of 74
Pseudo Genes (incomplete)::56 of 74
Pseudo Genes (internal stop)::4 of 74
Pseudo Genes (multiple problems)::6 of 74
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,598,243
Total ungapped length	4,598,243
Number of contigs	35
Contig N50	344,447
Contig L50	4
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	35

	ANI	Query coverage	Subject coverage
Declared type	99.99	99.99	99.81
Best-match type	99.99	99.99	99.81

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ASM283639v1

See Genome Information for Nocardioides alpinus

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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