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ASM252937v1

Organism name:
Porphyromonas gingivalis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: WW2842
BioSample:
SAMN07602651
BioProject:
PRJNA401301
Submitter:
University of Leicester
Date:
2017/10/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_002529375.1 (latest)
RefSeq assembly accession:
GCF_002529375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NSLW01
Assembly method:
SPAdes v. 3.6.2
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
Illumina MiSeq

IDs: 1315981 [UID] 5293978 [GenBank] 5357428 [RefSeq]

See Genome Information for Porphyromonas gingivalis

There are 112 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/05/2017 11:39:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,067
CDS (total)::2,009
Genes (coding)::1,897
CDS (coding)::1,897
Genes (RNA)::58
rRNAs::4, 1, 4 (5S, 16S, 23S)
complete rRNAs::3, 1 (5S, 16S)
partial rRNAs::1, 4 (5S, 23S)
tRNAs::47
ncRNAs::2
Pseudo Genes (total)::112
Pseudo Genes (ambiguous residues)::0 of 112
Pseudo Genes (frameshifted)::57 of 112
Pseudo Genes (incomplete)::51 of 112
Pseudo Genes (internal stop)::24 of 112
Pseudo Genes (multiple problems)::19 of 112
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,250,271
Total ungapped length2,250,271
Number of contigs95
Contig N5095,628
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)95

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,250,271952,250,27195,62800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Porphyromonas gingivalisPorphyromonas gingivalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000010505.1Porphyromonas gingivalis ATCC 33277type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000010505.1Porphyromonas gingivalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.4892.5088.39
Best-match type98.4892.5088.39

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna