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ASM223780v1

Organism name:
Kocuria indica (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 25126
BioSample:
SAMN06319220
BioProject:
PRJNA373958
Submitter:
CSIR- National Chemical Laboratory
Date:
2017/08/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002237805.1 (latest)
RefSeq assembly accession:
GCF_002237805.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MWSL01
Assembly method:
SPAdes v. OCT-2016
Expected final version:
yes
Genome coverage:
365.6x
Sequencing technology:
Illumina HiSeq

IDs: 1163311 [UID] 4894718 [GenBank] 4900288 [RefSeq]

See Genome Information for Kocuria indica

There are 11 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Marine Sediment.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/03/2017 16:12:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,603
CDS (total)::2,550
Genes (coding)::2,411
CDS (coding)::2,411
Genes (RNA)::53
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1 (16S, 23S)
partial rRNAs::2 (5S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::139
Pseudo Genes (ambiguous residues)::0 of 139
Pseudo Genes (frameshifted)::52 of 139
Pseudo Genes (incomplete)::89 of 139
Pseudo Genes (internal stop)::22 of 139
Pseudo Genes (multiple problems)::22 of 139
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,876,326
Total ungapped length2,876,326
Number of contigs48
Contig N50135,131
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)48

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,876,326482,876,326135,13100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Kocuria indicaKocuria indica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900177335.1Kocuria indicatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900177335.1Kocuria indicatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.00100.00100.00
Best-match type100.00100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna