Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM223736v1

Organism name:: Zobellella denitrificans (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: ZD1
BioSample:: SAMN07352936
BioProject:: PRJNA394555
Submitter:: Taipei Medical University
Date:: 2017/07/31
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_002237365.1 (latest)
RefSeq assembly accession:: GCF_002237365.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: NMUO01
Assembly method:: SPAdes v. 3.10.1
Expected final version:: no
Genome coverage:: 70.0x
Sequencing technology:: Illumina HiSeq

IDs: 1163091 [UID] 4894128 [GenBank] 4900048 [RefSeq]

See Genome Information for Zobellella denitrificans

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002237365.1	=	GCF_002237365.1	ASM223736v1	Contig	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from Kung-Hui Chu, Civil Engineering - Texas A&M Engineering.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::07/17/2017 07:54:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,891
CDS (total)::3,777
Genes (coding)::3,672
CDS (coding)::3,672
Genes (RNA)::114
rRNAs::8, 9, 8 (5S, 16S, 23S)
complete rRNAs::7, 1 (5S, 23S)
partial rRNAs::1, 9, 7 (5S, 16S, 23S)
tRNAs::85
ncRNAs::4
Pseudo Genes (total)::105
Pseudo Genes (ambiguous residues)::0 of 105
Pseudo Genes (frameshifted)::15 of 105
Pseudo Genes (incomplete)::95 of 105
Pseudo Genes (internal stop)::3 of 105
Pseudo Genes (multiple problems)::8 of 105
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	4,051,699
Total ungapped length	4,051,699
Number of contigs	217
Contig N50	33,403
Contig L50	36
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	217

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	91.73	81.05	77.75

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM223736v1

See Genome Information for Zobellella denitrificans

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result